PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1221240.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 484aa MW: 52817.7 Da PI: 7.4344

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1221240.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	110	185	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Pd.00g1221240.m01 110 CQVYGCDKDLSSSKDYHKRHKVCEAHSKTAKVIVNGREQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 185 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MMGKHFSNNP SRDVLSGKVY GERSTNTISM ATPNLFSAED VSSSKLSSSI VDSNSRDSSL 60 IDLKLGRLAD NRDFHDSKFS EGHPILSSSE SSTPPKRMRV SGSYSQTAYC QVYGCDKDLS 120 SSKDYHKRHK VCEAHSKTAK VIVNGREQRF CQQCSRFHLL AEFDDGKRSC RKRLAGHNER 180 RRKPQVGIHS GRAGSRFQDN MLTTASFICQ EILPSGILDA ENYGTNDWCR HIKVEDATHY 240 RPLSGVPVTN GHLPLKPVFP SYDIGKRYPP FHDNGTNPLT GNIIIENGSQ YSHDMRGLNS 300 GSHSMFHETT TLGSEDFNVF NTASTVHGLS GISDSGCALS LLSSQSQKSS SHLSGIPMAR 360 PPVMPVSHTN YRLVQSSENL IGGCSHASSS GVSNKLPSSG MNSGAGTHLG PILLSNGSDT 420 DDFGISDGIF QGSDFVNAKD CLSCEDGTTI DLLQLSSQLQ RVEDQRQSME VKQESDAFCC 480 LRIT

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MMGKHFSNNP SRDVLSGKVY GERSTNTISM ATPNLFSAED VSSSKLSSSI VDSNSRDSSL  60
IDLKLGRLAD NRDFHDSKFS EGHPILSSSE SSTPPKRMRV SGSYSQTAYC QVYGCDKDLS  120
SSKDYHKRHK VCEAHSKTAK VIVNGREQRF CQQCSRFHLL AEFDDGKRSC RKRLAGHNER  180
RRKPQVGIHS GRAGSRFQDN MLTTASFICQ EILPSGILDA ENYGTNDWCR HIKVEDATHY  240
RPLSGVPVTN GHLPLKPVFP SYDIGKRYPP FHDNGTNPLT GNIIIENGSQ YSHDMRGLNS  300
GSHSMFHETT TLGSEDFNVF NTASTVHGLS GISDSGCALS LLSSQSQKSS SHLSGIPMAR  360
PPVMPVSHTN YRLVQSSENL IGGCSHASSS GVSNKLPSSG MNSGAGTHLG PILLSNGSDT  420
DDFGISDGIF QGSDFVNAKD CLSCEDGTTI DLLQLSSQLQ RVEDQRQSME VKQESDAFCC  480
LRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-47	SBP family protein