PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1221050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 387aa MW: 42825.8 Da PI: 7.7536

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1221050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.3	1.4e-30	59	186	3	121
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesssssasnsss 87 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + i++l+ ++ ++ +++ ++++s+ ++++s++ Pd.00g1221050.m01 59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTEDDIDKLPPLQVPHGfahqfhQQMlNPHHSHDQGHQSNN 150 78*************************************************************55555333232222544555555444444 PP TCP 88 g..kaaksaakskksqksaasalnlakesrakarar 121 + +a ++ +s++ ++++++++ +++++r++ + Pd.00g1221050.m01 151 SlaAAPFFDVNSSFMEADHQAHQVVHDHQRSSTTTN 186 465555555577777777777777777666443333 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG 60 KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP 120 LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQVVHDHQR 180 SSTTTNVGDR KGKSIKTHDE QDDDDQNHHQ DGNIGGGQLL AQKLFPLGNH PSSIPGLLNN 240 AMAYNYYHNY SEPSSLSLSQ FGGHGFPPVP QIDHHSHMMA NALSFSSSMP SGSQLFFCPS 300 TATPSLFGPY PPYITNPGVE RGTNTSEPRS QANHFQFLSS SNSPNLLPNA LMSSLQSLKS 360 YPTSVNPKQL HSNSQDNNGS QPNKDHN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG  60
KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP  120
LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQVVHDHQR  180
SSTTTNVGDR KGKSIKTHDE QDDDDQNHHQ DGNIGGGQLL AQKLFPLGNH PSSIPGLLNN  240
AMAYNYYHNY SEPSSLSLSQ FGGHGFPPVP QIDHHSHMMA NALSFSSSMP SGSQLFFCPS  300
TATPSLFGPY PPYITNPGVE RGTNTSEPRS QANHFQFLSS SNSPNLLPNA LMSSLQSLKS  360
YPTSVNPKQL HSNSQDNNGS QPNKDHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	9e-49	TCP family protein