PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1216590.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22606.4 Da PI: 6.8445 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.3 | 9.1e-37 | 6 | 105 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+ eAe rardPv G+++ i++l +++++++ e Pd.00g1216590.m01 6 CAACRFQRKKCTQDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLWKIRTTEDE 97 ******************************************************************************************** PP DUF260 94 lallkeel 101 l++++++l Pd.00g1216590.m01 98 LQHVHSQL 105 ***99985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence |
MKHQTCAACR FQRKKCTQDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS 60 AMYSVKAEAE YRARDPVGGC YNEIKSLLWK IRTTEDELQH VHSQLCMFRA GGENAMAHPL 120 EGYEYNVVQD VEYDSQLHHQ LQHNIVQEQS GVVENHQERS NVFDLRDEVV LEQDVNPIQD 180 EGPLIHNSTS QLQSGKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-39 | LBD family protein |