PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1215320.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 347aa MW: 38384.8 Da PI: 5.4575

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1215320.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	2e-09	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Pd.00g1215320.m01 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 58*****************************55 PP
2	zf-B_box	27.6	6.2e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC C +H+ H++vp+ Pd.00g1215320.m01 46 VWLCEVCEQAPAHVTCKADDAALCVACDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP
3	CCT	69.8	6.7e-24	282	325	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g1215320.m01 282 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 325 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV ACDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAPVVKS VVNFLDDRYL 120 SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDVCDPY TKSMSSAVES THQAVQISSA DREARVLRYR EKRKNRKFEK 300 TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRFGQA KASDSDP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV ACDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAPVVKS VVNFLDDRYL  120
SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL  180
EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS  240
MDVSVVPDGN TTMTDVCDPY TKSMSSAVES THQAVQISSA DREARVLRYR EKRKNRKFEK  300
TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRFGQA KASDSDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-127	CO-like family protein