PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1205760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 344aa    MW: 37075.7 Da    PI: 8.0861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1205760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016153175123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C++ Fs++  L  H++ H
  Pd.00g1205760.m01 153 FTCNFCKREFSTSQALGGHQNAH 175
                        89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MAEESRVERL SSTSEASNIS AASDGPPPTQ KDGPENLDQK LKMKLKEKIV IDDSDDDDTQ  60
QPPQQPLPPP AVKSSSSPSP SSRLRLDLKL CNDNPARGSG STSRLELSLF NTSNPGSSNP  120
GSSNPVSRYS QPNETTDENP RGSDDKRSQP RVFTCNFCKR EFSTSQALGG HQNAHKQERA  180
LAKRRQGGLE NMGGVLGHSP FSYYNPYSSF SSPSLYGSFN RSLGVRMDSM IHKPSYPWSS  240
TPGFGRFGHG SGAWSSRAGG LLNFQSTIDR LNLEGLHASA PNGILGLPGT SSAPRFDQEI  300
GAVRNFGDSS SNFGINRPFL GDLIRREPPT SDTDSAGLDL SLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.19e-17C2H2 family protein