PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1204190.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 341aa MW: 37185.3 Da PI: 7.1539

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1204190.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	170	196	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g1204190.m01 170 PGEPDCPYFINTQRCKFGMRCKFNHPK 196 5789*********************96 PP
2	zf-CCCH	36.8	6.4e-12	219	243	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Pd.00g1204190.m01 219 EPPCAFYLKMGQCKFGATCKFHHPK 243 79*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MTVEEVIDHD IGAWNFEFIE GLLSDSKKQA IRLVPIGSRF AGDILIWPLE KSRIYSIKCL 60 GQLLHLQINL GFTSPNNQCR AISKDTAPAQ SAAADAAATA GLSRVYTSHA LTDSYLSDLT 120 LRYLSGSDPS ASATDHHSRT FPISSPAFPA SNAPLKVPLV APSEFLSERP GEPDCPYFIN 180 TQRCKFGMRC KFNHPKDKLA AAVASENSDV FALPERPSEP PCAFYLKMGQ CKFGATCKFH 240 HPKDIQIPSA EQENKIGEIG TTIQLEGTGF AVKPPALSFN SKELPVRLGE PDCPFYLKTG 300 SCKFTISSSE GWNLNLGSKS STDSSVVVLI RSTVLDNWNI R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	9e-54	C3H family protein