PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1203060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 339aa MW: 37505.8 Da PI: 5.2808

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1203060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	1.9e-09	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Pd.00g1203060.m01 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 68*****************************55 PP
2	zf-B_box	28	4.6e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ Pd.00g1203060.m01 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP
3	CCT	55.6	2e-19	287	321	10	44
CCT 10 eKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g1203060.m01 287 EKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321 8********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAPVVKS VVNFLDDRYF 120 SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDVCDPY TKSMSSAVES THQAVQISSA DREARVEKRK NRKFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TEVEIEAERL CRYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-125	CO-like family protein