PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1198420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 491aa MW: 53492.6 Da PI: 6.787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1198420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.5e-16	329	375	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Pd.00g1198420.m01 329 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 375 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MGPDHELVEL LWRNGQVVLH SQTHRKPSPN PPNEARQVQK QDQQTIRVGG LYGNSSNLTQ 60 DEGTGSLIHY PLEDSFDKEF CSHFFSELPS CDPIEIDKPT KQFEEEKFAK FGASDTPHLV 120 SSAPQPNVKS PAGMGYPANP MPPPRYQYNN STEQNQNLGG LGKVVNFSTF ATPGKGDRGS 180 SRGTIGGKES GNLTQGEVKE CSVMTVGSSY VGSNQVLNDL DVSRASSNCD GTTGLSVGPF 240 YDNVQKMMPQ SETGKTDTLD PTLTSSSGGS GSSFGRGGKR SNVVNSNKRK GRDAEDSECQ 300 SEAAELESAA GNKSAQRSGS SRRSRAAEVH NLSERRRRDR INEKMRALQE LIPHSNKTDK 360 ASMLDEAIEY LKSLQMQLQV MWMGSGMAPM IVPLVDQCMN VAPATNQAVM CQAPVLNPVD 420 YHNQMQNPAF QEQYARLMGF HHMQTMSQPM NMFRFGSQPM QQNQMIAPTG INSGHLGGGV 480 TANDTLSGKM C

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MGPDHELVEL LWRNGQVVLH SQTHRKPSPN PPNEARQVQK QDQQTIRVGG LYGNSSNLTQ  60
DEGTGSLIHY PLEDSFDKEF CSHFFSELPS CDPIEIDKPT KQFEEEKFAK FGASDTPHLV  120
SSAPQPNVKS PAGMGYPANP MPPPRYQYNN STEQNQNLGG LGKVVNFSTF ATPGKGDRGS  180
SRGTIGGKES GNLTQGEVKE CSVMTVGSSY VGSNQVLNDL DVSRASSNCD GTTGLSVGPF  240
YDNVQKMMPQ SETGKTDTLD PTLTSSSGGS GSSFGRGGKR SNVVNSNKRK GRDAEDSECQ  300
SEAAELESAA GNKSAQRSGS SRRSRAAEVH NLSERRRRDR INEKMRALQE LIPHSNKTDK  360
ASMLDEAIEY LKSLQMQLQV MWMGSGMAPM IVPLVDQCMN VAPATNQAVM CQAPVLNPVD  420
YHNQMQNPAF QEQYARLMGF HHMQTMSQPM NMFRFGSQPM QQNQMIAPTG INSGHLGGGV  480
TANDTLSGKM C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	339	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	6e-49	bHLH family protein