PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g119830.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22611.3 Da PI: 6.7821 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 6 | 105 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ a+ s+ eAe r rdPv G+++ i++l +++++++ el Pd.00g119830.m01 6 CAACRFQRKKCTQDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSATYSVKAEAEYRDRDPVGGCYNEIKSLLWKIRTTEDEL 98 ********************************************************************************************* PP DUF260 95 allkeel 101 ++++++l Pd.00g119830.m01 99 QHVHSQL 105 **99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MKHQTCAACR FQRKKCTQDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS 60 ATYSVKAEAE YRDRDPVGGC YNEIKSLLWK IRTTEDELQH VHSQLCMFRA GGENAMAHPL 120 EGYEYKVVQD VEYDSQLHHQ LQQNIVQEQS GVVENHQERS NVFDLRDEVV LEQDVNPIQD 180 EGPVIHNSTS QLQSGKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-37 | LBD family protein |