PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1195380.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28028.8 Da    PI: 8.9035
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1195380.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  Pd.00g1195380.m01  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                       79***********************************************96 PP
2K-box951.2e-3182172999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +++ es+++e+ kLk + e+Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++R +K++++l+q+++lq+ke++l e+n++L+ kl+
  Pd.00g1195380.m01  82 KPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLESSLKQVRCTKTQYMLDQLSDLQNKEQMLIEANRDLSLKLD 172
                        4677899*******************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS  60
SSILKTLERY QKCSYGQVEV NKPAKELESS YREYLKLKGR FESLQRTQRN LLGEDLGPLN  120
TKELEQLERQ LESSLKQVRC TKTQYMLDQL SDLQNKEQML IEANRDLSLK LDDISSRNQI  180
RQSWEGGNQG GMAYETQHAQ SQGFFQPLDC NPTLQIGYSN VGSEQMSATT HAQQVNGFIP  240
GWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-124MIKC_MADS family protein