PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1193300.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 777aa MW: 85544.7 Da PI: 6.1568 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.8e-20 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Pd.00g1193300.m02 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 688999***********************************************999 PP | |||||||
2 | START | 216.2 | 1.2e-67 | 281 | 502 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 e+a +a++el+++a+ +ep+W++s + n+de++++f++ ++ ea+r+s+vv+m++ +lve+l+d++ qW++ + +a Pd.00g1193300.m02 281 EIAVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpsnhFKCEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRA 371 57899********************88777789********99777999999**************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 +tlev+s+g galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d +++p ++++pSg+li++++ng+skv Pd.00g1193300.m02 372 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHIDGTWAVVDVSLDTLRPNPA---PRSCQRRPSGCLIQEMPNGYSKV 460 *****************************************************************4...455789***************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twvehvd+++r +h+l+++lv+sg a+gak+wvatl+rqce+ Pd.00g1193300.m02 461 TWVEHVDVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 502 ****************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 777 aa Download sequence |
MPAGLMIPAR NMPSMIGSNG NISGFGSSSG LTLGQPNLME AGHLHPLDMA PNTSESDIAR 60 IREDDFDSAT KSGSDNPEGG SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR 120 KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGSASC 180 PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVGNYPL LSSPVPSRSP 240 LDLGVGSFGG QQGMAGEMYG GGDLLRSISG PNEADKPLII EIAVAAMEEL IRMAQMGEPL 300 WMTSLDGNTT VFNEDEYIRT FPRVAPKPSN HFKCEASRES AVVIMNHINL VEILMDVNQW 360 STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHIDG 420 TWAVVDVSLD TLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHVDVDE RGVHNLYKQL 480 VNSGNAFGAK RWVATLDRQC ERLASALASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC 540 AGVSASTTHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL 600 RDENSRNEWD ILSNGGIVQE MAHIANGRDT GNCVSLLRSA NSSQSNMLIL QESCTDQTAS 660 FVIYAPVDIV AMNVVLNGSD PDYVALLPSG FAILPDGGGM GDSGSGGSLL TVAFQILVDS 720 VPTAKLSLGS VATLIFSVLW WRKEGERRET QTQMLVRDLG LYTRRRERSQ ERTLHDP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05230.3 | 0.0 | HD-ZIP family protein |