PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1193050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 430aa MW: 46184.5 Da PI: 6.1902

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1193050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.5e-16	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l Pd.00g1193050.m01 38 KGPWTAAEDGILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 85 79******************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MMLNSSGVDG VHEAEAAAQR GGSHHNHQQQ HQQRGLKKGP WTAAEDGILM EYVKKHGEGN 60 WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLSPDEER LIIELHAKFG NKWARMASQP 120 RKPSTYSPAQ LSLYDHITTF SSSSDHHNNH TNNYHRNAAS LFSNPITQFN GNGGGFAMPF 180 GSSSSSALFN QSHNIPNPNP FGSSSATPPP LHHQYNSHGG FGGYNNLSLS SIIMGPPSYD 240 STAGLVAGSN AELPSNQTPP SIHGDEAPMG ASGNTNEDDR YEIAPVPSQG NSGLLDDVLA 300 EAHNISNKRL KMQIESTLKN SGDNSAENQR DDSSSPSSID MKQSEDPLDE MDDDLLSLLN 360 FSSTVPAVSE TSWYLAECMS NSGSSASENV GLDTQQNAPL TLTSVKTTAA APEVQSTLGA 420 CYWNNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MMLNSSGVDG VHEAEAAAQR GGSHHNHQQQ HQQRGLKKGP WTAAEDGILM EYVKKHGEGN  60
WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLSPDEER LIIELHAKFG NKWARMASQP  120
RKPSTYSPAQ LSLYDHITTF SSSSDHHNNH TNNYHRNAAS LFSNPITQFN GNGGGFAMPF  180
GSSSSSALFN QSHNIPNPNP FGSSSATPPP LHHQYNSHGG FGGYNNLSLS SIIMGPPSYD  240
STAGLVAGSN AELPSNQTPP SIHGDEAPMG ASGNTNEDDR YEIAPVPSQG NSGLLDDVLA  300
EAHNISNKRL KMQIESTLKN SGDNSAENQR DDSSSPSSID MKQSEDPLDE MDDDLLSLLN  360
FSSTVPAVSE TSWYLAECMS NSGSSASENV GLDTQQNAPL TLTSVKTTAA APEVQSTLGA  420
CYWNNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	5e-50	MYB family protein