PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1191070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 405aa MW: 43466.2 Da PI: 4.5013

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1191070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.3	4.9e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Pd.00g1191070.m01 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	24.3	6.5e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C++ ++ lC++C +H g H++++ Pd.00g1191070.m01 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GtstsasaHKRQT 89 57*****************************.5578888888765 PP
3	CCT	22.5	4.2e-09	359	380	1	22
CCT 1 ReaallRYkeKrktRkFeKkir 22 R +a++RYkeK+k RkF+K++r Pd.00g1191070.m01 359 RSNAVMRYKEKKKARKFDKRVR 380 899*****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC 120 EQEMGLMSIA ENSTGSAWSP PESNTKQNAS GTVEVNGVRS VDKSSVLVGS SSVPELNPAT 180 HVVGQQGGSE NATLPKLFCH GTKGPAIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNMSR CNSNYQDVGA AEGSSVGLVN AIQPACSNAA SADSVMSTKT 300 DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS 360 NAVMRYKEKK KARKFDKRVR PEPEATDDKL YDCITGPWFP SGEEG

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC  120
EQEMGLMSIA ENSTGSAWSP PESNTKQNAS GTVEVNGVRS VDKSSVLVGS SSVPELNPAT  180
HVVGQQGGSE NATLPKLFCH GTKGPAIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS  240
EELFKNGGID SLFGAKNMSR CNSNYQDVGA AEGSSVGLVN AIQPACSNAA SADSVMSTKT  300
DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS  360
NAVMRYKEKK KARKFDKRVR PEPEATDDKL YDCITGPWFP SGEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-108	CO-like family protein