PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g118730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 343aa MW: 38030.5 Da PI: 5.6449 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.2 | 1.9e-09 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Pd.00g118730.m01 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 58*****************************55 PP | |||||||
2 | zf-B_box | 27.6 | 6.1e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC C +H+ H++vp+ Pd.00g118730.m01 46 VWLCEVCEQAPAHVTCKADDAALCVACDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP | |||||||
3 | CCT | 69.9 | 6.6e-24 | 282 | 325 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Pd.00g118730.m01 282 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 325 9*****************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence |
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV ACDRDIHSAN PLSRRHERVP VTPFYDSANS AANSAPVVKS VVNFLDDRYL 120 SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDVCDPY TKSMSSAVES THQAVQISSA DREARVLRYR EKRKNRKFEK 300 TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRYGVV PSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-129 | CO-like family protein |