PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1174880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 479aa MW: 54305.7 Da PI: 9.1971

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1174880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	81	134	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Pd.00g1174880.m01 81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134 456899***********************************************9 PP
2	HD-ZIP_I/II	128.5	2.7e-41	80	170	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++n++L++++++L++e+ Pd.00g1174880.m01 80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKADNDALQAQNQKLQAEI 170 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MTGNGMAFFS ANFMLQTPHD HDDHQPPTSL NPMLPSCTPQ DFHGVASFLG KRSVSFSGIE 60 LGEEAHGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE AIKADNDALQ AQNQKLQAEI LALKSREPAE 180 SINLNKETEG SCSNRSENNS DIKLDISRTP AIDSPQSTHP NPTSRTLFSS SLIRPSSGVA 240 QLFQNTSRPE VIQCQKIDQM VKEESLTNMF CGIDDQSAGL NIKFNFQVGA GNLYGGINKG 300 YQMVNKIYLK LKEEYKIERE RQREYPARIP RGNEDKEIEE WRKQSGKKKP TTETIFFDGG 360 AHYGDLLANL ILGFTLLWLP LTLAAVFRAF FLRYRFTNLR VTVISGLTGQ DRSDFSYKVI 420 KDVQVVPRFI GEWGDIIITL RDGTKVDLRS VPKFREIAKY CLSLADKPAV LKEKGSKGF

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MTGNGMAFFS ANFMLQTPHD HDDHQPPTSL NPMLPSCTPQ DFHGVASFLG KRSVSFSGIE  60
LGEEAHGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE AIKADNDALQ AQNQKLQAEI LALKSREPAE  180
SINLNKETEG SCSNRSENNS DIKLDISRTP AIDSPQSTHP NPTSRTLFSS SLIRPSSGVA  240
QLFQNTSRPE VIQCQKIDQM VKEESLTNMF CGIDDQSAGL NIKFNFQVGA GNLYGGINKG  300
YQMVNKIYLK LKEEYKIERE RQREYPARIP RGNEDKEIEE WRKQSGKKKP TTETIFFDGG  360
AHYGDLLANL ILGFTLLWLP LTLAAVFRAF FLRYRFTNLR VTVISGLTGQ DRSDFSYKVI  420
KDVQVVPRFI GEWGDIIITL RDGTKVDLRS VPKFREIAKY CLSLADKPAV LKEKGSKGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-111	HD-ZIP family protein