PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g117420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-X1

Protein Properties

Length: 786aa MW: 88029 Da PI: 8.4653

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g117420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.4	1.1e-06	320	341	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp...Cp 19 CG+H C++ C+ G+Cpp C+ Pd.00g117420.m01 320 CGRHACKRRCCDGDCPPklrCK 341 *****************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MPGADPTWSC TSVCFSVFHL ICIQSLARQA SDLSALRAST RLPISAQKAA EVSLWNCPKC 60 RVEYPQSQIP KTYFCFCGKL ENPPSDDPWV LPHSCGEVCN RPLNHSCGHH CLLLCHPGPC 120 PSCPKLVKAR CFCGSVQDVR RCGFKNFSCN NVCKKLLACR VHCCSEICHQ GPCPPCPVRA 180 VYRCQCGKRE EERECCERLD FRCEEPCEKV LGCGQHKCSK GCHSEDCGPC PFQGKRTCPC 240 GKTVHEGLSC KASVPLCGAT CSKMLSCGYH RCPERCHRGQ CIVTCRTVVI KSCRCGSLKK 300 EVPCHQDLTC ERKCQRQRDC GRHACKRRCC DGDCPPKLRC KNHKCPSPCH RGACAPCPVM 360 VTIACLCGET HFEVPCGIEM DQKPPRCPKP CPITLLCRHG KNRKPHKCHY GACPPCRVLC 420 EEEYPCGHKC KLRCHGPRPP PNPEFTLKPK KKKSLHQSEC TPGSPCPPCP EHVWRSCVGQ 480 HIGVERMMVC SDKTLFSCEN LCGNPLPCGN HFCTKTCHPL KNQSLPSVQQ ARSEPCEKCH 540 LPCGKEREPA CSHPCPLSCH PGDCPPCKVL VKRSCHCGSM VHVFECIYYN SLSEKEQMAA 600 RSCGGPCHRK LPYCNHLCPE LCHPGQCSFP EKCSKKVTVR CACQSLKKEW LCHDVQAAYR 660 NAGSDPKDIS KNQFGHALIP CNSNCKSKLK VIDSELQLRR PKTVEVKEPD TDKHGPKRKK 720 RRERVQEVTQ ISTLQKIVSN VKRFLLLVTL LLVLVAVSYY GYKGLLWLND WMNEVEEKRQ 780 GRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MPGADPTWSC TSVCFSVFHL ICIQSLARQA SDLSALRAST RLPISAQKAA EVSLWNCPKC  60
RVEYPQSQIP KTYFCFCGKL ENPPSDDPWV LPHSCGEVCN RPLNHSCGHH CLLLCHPGPC  120
PSCPKLVKAR CFCGSVQDVR RCGFKNFSCN NVCKKLLACR VHCCSEICHQ GPCPPCPVRA  180
VYRCQCGKRE EERECCERLD FRCEEPCEKV LGCGQHKCSK GCHSEDCGPC PFQGKRTCPC  240
GKTVHEGLSC KASVPLCGAT CSKMLSCGYH RCPERCHRGQ CIVTCRTVVI KSCRCGSLKK  300
EVPCHQDLTC ERKCQRQRDC GRHACKRRCC DGDCPPKLRC KNHKCPSPCH RGACAPCPVM  360
VTIACLCGET HFEVPCGIEM DQKPPRCPKP CPITLLCRHG KNRKPHKCHY GACPPCRVLC  420
EEEYPCGHKC KLRCHGPRPP PNPEFTLKPK KKKSLHQSEC TPGSPCPPCP EHVWRSCVGQ  480
HIGVERMMVC SDKTLFSCEN LCGNPLPCGN HFCTKTCHPL KNQSLPSVQQ ARSEPCEKCH  540
LPCGKEREPA CSHPCPLSCH PGDCPPCKVL VKRSCHCGSM VHVFECIYYN SLSEKEQMAA  600
RSCGGPCHRK LPYCNHLCPE LCHPGQCSFP EKCSKKVTVR CACQSLKKEW LCHDVQAAYR  660
NAGSDPKDIS KNQFGHALIP CNSNCKSKLK VIDSELQLRR PKTVEVKEPD TDKHGPKRKK  720
RRERVQEVTQ ISTLQKIVSN VKRFLLLVTL LLVLVAVSYY GYKGLLWLND WMNEVEEKRQ  780
GRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	716	722	PKRKKRR
2	718	724	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein