PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1168540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 347aa MW: 38768.5 Da PI: 6.6486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1168540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	171	217	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Pd.00g1168540.m01 171 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKHLQ 217 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEDPTFIHQY EMNSLDYSLD DLNFQSFSSE SYSSDPNFTP KATHNFSNAS IETPHQAGTH 60 ERPAKQPKNH TTWNPCTTDH TFMAKAASSS SSHLISFDNS NSSPPTSSQQ FYGTLDNTMK 120 PKNEVEYSNG KLNLTTLISQ GSYDPQTCSP RHGQGIKRAA TVTRSPLHAQ DHVLAERKRR 180 EKLSQRFIAL SALVPGLKKM DKASVLGDAI KYVKHLQERT KMLEEQAVKK TVEAVVFVRR 240 TQYSADDDIS SSDENFESCS DQPLPEIEAR VSDKEVLIRV HCEKTKGCLA KILSEIESLD 300 LTIVNSSVLP FGNSTLDITV IAQMDAEFSM TVKDVVKNLR QSLLKFV

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEDPTFIHQY EMNSLDYSLD DLNFQSFSSE SYSSDPNFTP KATHNFSNAS IETPHQAGTH  60
ERPAKQPKNH TTWNPCTTDH TFMAKAASSS SSHLISFDNS NSSPPTSSQQ FYGTLDNTMK  120
PKNEVEYSNG KLNLTTLISQ GSYDPQTCSP RHGQGIKRAA TVTRSPLHAQ DHVLAERKRR  180
EKLSQRFIAL SALVPGLKKM DKASVLGDAI KYVKHLQERT KMLEEQAVKK TVEAVVFVRR  240
TQYSADDDIS SSDENFESCS DQPLPEIEAR VSDKEVLIRV HCEKTKGCLA KILSEIESLD  300
LTIVNSSVLP FGNSTLDITV IAQMDAEFSM TVKDVVKNLR QSLLKFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERKRRE
2	177	182	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-68	bHLH family protein