PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1167520.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 292aa    MW: 34058.3 Da    PI: 6.9422
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1167520.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64e-102167153
                AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                       s++kGV+  k +g W A+I   +      k ++lg +  +eeAa a+++a+ kl
  Pd.00g1167520.m01 21 SRFKGVSLLK-SGNWSARISYmY------KPYWLGAYQMEEEAAIAYDRAAVKL 67
                       789*****99.7******87733......**********************988 PP
2B363.43.5e-20140234186
                        EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                        f+k+lt+ dv+ ++ + +p++f  ++          g+++++ ++l+++d++g sW++ ++y+++ + +++t+GW +F + n+L+++D+v+F
  Pd.00g1167520.m01 140 FQKELTHRDVTHKC-FLIPREFSFRClpppegiinaGEDEARYVKLSFYDKHGCSWTFGYSYWQSTRNFMFTNGWGHFIRMNNLNQKDIVMF 230
                        99**********99.9******9899**********99999*************************************************** PP

                        EE-S CS
                 B3  83 kldg 86 
                        ++ +
  Pd.00g1167520.m01 231 YRCE 234
                        *543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEAEFVSESR VDMVLQRGPS SRFKGVSLLK SGNWSARISY MYKPYWLGAY QMEEEAAIAY  60
DRAAVKLQRG DTPLNFHWSK YSAEESIFQS QYSTEEILSM LKDKTYSSKL MNFLSRHSSG  120
SGTRTTTFMN EQGISYHFLF QKELTHRDVT HKCFLIPREF SFRCLPPPEG IINAGEDEAR  180
YVKLSFYDKH GCSWTFGYSY WQSTRNFMFT NGWGHFIRMN NLNQKDIVMF YRCEYEGEVL  240
GREVYMIDYQ RSNGENYVLE HSSGSSTIEL EADCKEKETK KGFKLFGVEI NG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-41RAV family protein