PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1165270.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 319aa    MW: 34542.2 Da    PI: 8.4839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1165270.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014128150123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C++ Fs++  L  H++ H
  Pd.00g1165270.m01 128 FTCNFCKREFSTSQALGGHQNAH 150
                        89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MASGSRVPAV WNNQNTTIFC DLCIKEVEAG NHLGTHFKKE GWENVRISLS KETGADSRLR  60
LDLKLCNNES AHGLGSSSRL ELNLFKPSNL GSSNPGSSNP VSEYSQPNET TDENPRGSDD  120
KRSQPRVFTC NFCKREFSTS QALGGHQNAH KQERALAKRQ QGGLENMGGV LGHSPFSYYN  180
PYSSLSSPSL YGSFNRSLGV RMDSMIHKPS YPWSSTPGFG RFGPSSGAWS SRAGSLLNFQ  240
STMDRLNLEG LHANAPSGIS GLPGTSSASR FDKEIGVVHN FGGSNSNSEI NRPILGDLLR  300
REPPTSDTDT AGLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-16C2H2 family protein