PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1161790.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1095aa MW: 122475 Da PI: 9.905

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1161790.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ Pd.00g1161790.m02 45 EWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRSIEMVE 81 7***************99.*****.*98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence
MAPTKKSKSV KRYATVNEAS PEKYGGGSNH KKQRKRKLSD KLGPEWSKGE LERFYDAYRK 60 YGKDWRKVAA AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE 120 RESNDALGFS RKPQKRKLGK DQLSASKDVF QSHSNASHEG CLSLLKRRRL DGGQPRAVGK 180 RTPRFPVSYA YKKDDRDTYV SPIKKGRRSE GDNDDEVAHV AALLTEASQR GGSPQISRTP 240 YRRPVHVKSS SVQSSERMHP PRGKARANLR DPSMDEDWLE GSIGSKGAET GDYARDSLEG 300 VGTVEINWKG KKFYGKKEKA KDIGNHQFDD GGEACSGTEE GLNVSSRGKD DIEVSNTKGE 360 RFSPQGQRKR SKKLYFGDES SCLDALQTLA DLSLMMPEST MESGSSVQLK EEGTNLDVED 420 KFSVPEATST SQSRNKNKIP SAKHRVPFAI SGVEGINSKK SKLGREPAFD TTAVSESEQQ 480 LQSTTKSWKR KRKSSVSKIS NADAPIDSNI NEPLKIEAFG EEENKPVTKG KRTNQSSTPS 540 KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ APTSNYVNLP TKRISRRKMY IPRTLHPKEK 600 SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC CLSSHLVRRW CTFEWFYSAL DYPWFARREF 660 EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRFSEHFLHE EREKLKLYRE SVRKHYAELR 720 TGDREGLPTD LARPLSVGQR VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PDIGVEFVMG 780 DSNHTTSQPK AASADIDRAQ AQQSTYSQPG MVVAHNQARD ADIRALSELT RALDKKEALL 840 MELRNTNNNI LENQNSGECS LKDSEPFKKH YATVSSALLN LRQRNTYPAN SLPPWLKQPA 900 NSTVYGGLPS SFDSSISQES GSNVAEIVEV SRSKAHMMVN AAIQAMSSRK GGEDAYVRIR 960 EALDSIDNQH LPSDSRLSLN RSQEQVNGNL GHRNQLISST SDPNFTSDSP GPKPNTDTEK 1020 TEAQVLSDVI SACVMAVHMI QTCTERQYPP AVVAQVLDYA VTSLHPRCPQ NVGIYREIQM 1080 CMGRIKTQIL ALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence

MAPTKKSKSV KRYATVNEAS PEKYGGGSNH KKQRKRKLSD KLGPEWSKGE LERFYDAYRK  60
YGKDWRKVAA AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE  120
RESNDALGFS RKPQKRKLGK DQLSASKDVF QSHSNASHEG CLSLLKRRRL DGGQPRAVGK  180
RTPRFPVSYA YKKDDRDTYV SPIKKGRRSE GDNDDEVAHV AALLTEASQR GGSPQISRTP  240
YRRPVHVKSS SVQSSERMHP PRGKARANLR DPSMDEDWLE GSIGSKGAET GDYARDSLEG  300
VGTVEINWKG KKFYGKKEKA KDIGNHQFDD GGEACSGTEE GLNVSSRGKD DIEVSNTKGE  360
RFSPQGQRKR SKKLYFGDES SCLDALQTLA DLSLMMPEST MESGSSVQLK EEGTNLDVED  420
KFSVPEATST SQSRNKNKIP SAKHRVPFAI SGVEGINSKK SKLGREPAFD TTAVSESEQQ  480
LQSTTKSWKR KRKSSVSKIS NADAPIDSNI NEPLKIEAFG EEENKPVTKG KRTNQSSTPS  540
KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ APTSNYVNLP TKRISRRKMY IPRTLHPKEK  600
SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC CLSSHLVRRW CTFEWFYSAL DYPWFARREF  660
EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRFSEHFLHE EREKLKLYRE SVRKHYAELR  720
TGDREGLPTD LARPLSVGQR VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PDIGVEFVMG  780
DSNHTTSQPK AASADIDRAQ AQQSTYSQPG MVVAHNQARD ADIRALSELT RALDKKEALL  840
MELRNTNNNI LENQNSGECS LKDSEPFKKH YATVSSALLN LRQRNTYPAN SLPPWLKQPA  900
NSTVYGGLPS SFDSSISQES GSNVAEIVEV SRSKAHMMVN AAIQAMSSRK GGEDAYVRIR  960
EALDSIDNQH LPSDSRLSLN RSQEQVNGNL GHRNQLISST SDPNFTSDSP GPKPNTDTEK  1020
TEAQVLSDVI SACVMAVHMI QTCTERQYPP AVVAQVLDYA VTSLHPRCPQ NVGIYREIQM  1080
CMGRIKTQIL ALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	KKQRKRKL
2	131	138	KKQRKRKL
3	166	170	KRRRL
4	586	607	RRKMYIPRTLHPKEKSSEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-179	MYB_related family protein