PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1136540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 562aa    MW: 60533 Da    PI: 9.3104
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1136540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.61.1e-30100184187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  Pd.00g1136540.m01 100 RWPRQETLALLKIRSEMDVSFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 184
                        8*********************************************************************866665..******985 PP
2trihelix107.87.2e-34368453187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Pd.00g1136540.m01 368 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 453
                        8*********************************************************************8.99999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MQQGAGGAQT HYGVGAAEDM GAAAGPSSSS MAAAAAEAGD QAQLVEAASP ISSRPPASAS  60
VNLDELMTLS GAAAAAEDAL AASRDEADRG GGGVGSSGNR WPRQETLALL KIRSEMDVSF  120
RDATLKGPLW EDVSRKLAEL GYKRSAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYKFFS  180
ELEALHGTAA ATSSVNVSAS PAVHVTHASP NPVSIGFSNP MPISSFRMSP TIPVMQKQET  240
MQQRFLEVIE KREQDRTIRE EAWKRQEMAR LTREHELMSQ DRAISASRDA AIISFLQKIT  300
GQTIQLPPPV NVHAAPPPPV PPSVPVVTPL AQQSVVMAVP EQQVQPPQEN IASGGGAGGS  360
LEPASSSRWP KAEVLALIKL RSGLESRYQE AGPKGPLWEE ISAGMGRMGY KRSSKRCKEK  420
WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKRIL GGGGGGGSSS SLGTQNRLEQ  480
PQQQQLQLEN PKSDSATQPQ DRSLEAQPSV PVMPQTQEAV VATAQSEDKN GDHSTNVETS  540
NVGLRANLFG EATDEAAKKK TL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151KRSAKKCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-65Trihelix family protein