PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1134080.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 200aa    MW: 21697.8 Da    PI: 8.4956
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1134080.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY144.89.2e-45131574163
              YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                        ++ se++Cyv+CnfC+t+lav +P++ l+ +vtv+CGhC++l  ++ + a q +  ++h            l  +   ++  + ++ ++ +s
  Pd.00g1134080.m01  13 NQPSEHLCYVRCNFCSTVLAVGLPFKRLLDTVTVKCGHCSNLSFLSTRPALQGQCLSDH---------PTSLTLQAGCCS--DFRKGQS-SS 92 
                        5789*************************************988777777776666666.........222222222222..2222222.22 PP

              YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                         ss   + +++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  Pd.00g1134080.m01  93 SSS---PISSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 157
                        222...234566789999************************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MNLEEKVTMD LINQPSEHLC YVRCNFCSTV LAVGLPFKRL LDTVTVKCGH CSNLSFLSTR  60
PALQGQCLSD HPTSLTLQAG CCSDFRKGQS SSSSSPISSE PSSPKAPFVV KPPEKKHRLP  120
SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNWARYIPS PSAGSDSGSC SSTNNIDALK  180
GSDFAGMNIL AMCCQNPKTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-62YABBY family protein