PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1131880.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21371.8 Da PI: 7.3393 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.5 | 7.1e-36 | 48 | 142 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq + ++ Pd.00g1131880.m01 48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQPAYSN 139 7***********************9989***********************************************************98777 PP DUF260 92 ael 94 + Pd.00g1131880.m01 140 NSS 142 655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MADQPVQGDH CTSKSRRKGT SGGAGRPTSN TEAAATTNNT VVVGGAPPCG ACKFLRRKCI 60 SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHIPLN RRQDAVVTIS YEAQARLADP 120 VYGCVSTILA LQQQPAYSNN SSASTNLINM CSFTSNFDLA AKTAPSSQSL DPLQLSRPSQ 180 DDEDDEEESQ VPLMFANDRY T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-60 | LBD family protein |