PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1127780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 597aa MW: 65886.9 Da PI: 6.524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1127780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	4.9e-13	426	472	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Pd.00g1127780.m01 426 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 472 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MVAAVLGTRA FDYLISSSVS SNENSCMGIG TDENLHNKLS DLVEPPNASN FSWNYAIFWQ 60 ISRSKSGDWA LCWGDGSCRE PKEGEESEAT RNLNLRLEDE TQQTMRKIVL QKLHTLFGSS 120 DEYNGALGLD RVTDTEMFLL ASMYFSFPRG EGGPGKCFAS GKHVWLSDLL KSESDYCVRS 180 FLAKSAGVQT IVLVPTDVGV VELGSVRCVG ESLELLQSIR SLFSTQSSLM RSKPLTGFPV 240 MGKRRDENAQ LTNLSPVERG EGVPKIFGQD LNSGNSGRPR YREKLAVRKV EERPWDVYSN 300 GNRIAFSSPR NCIQGSSWPH IHDAKQGSPI EMYASQSPVN NIQELVNGVR DDFRLNHYQP 360 QKQVPMQIDF SGATSRPSVV ARPVGADSEN SDAEAPCKEE RPGTADERRP RKRGRKPANG 420 REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYINE LQAKLKVMEA 480 DRENLGGTSR DASALGANPG ISMENQSQAT DVDIQAVHDE VVVRVSCPLD SHPASRVIQA 540 FKEAQITVVE SKLDAANDTV FHTFVIKSQG SEPLTKEKLI AAFSRESNSL QSLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MVAAVLGTRA FDYLISSSVS SNENSCMGIG TDENLHNKLS DLVEPPNASN FSWNYAIFWQ  60
ISRSKSGDWA LCWGDGSCRE PKEGEESEAT RNLNLRLEDE TQQTMRKIVL QKLHTLFGSS  120
DEYNGALGLD RVTDTEMFLL ASMYFSFPRG EGGPGKCFAS GKHVWLSDLL KSESDYCVRS  180
FLAKSAGVQT IVLVPTDVGV VELGSVRCVG ESLELLQSIR SLFSTQSSLM RSKPLTGFPV  240
MGKRRDENAQ LTNLSPVERG EGVPKIFGQD LNSGNSGRPR YREKLAVRKV EERPWDVYSN  300
GNRIAFSSPR NCIQGSSWPH IHDAKQGSPI EMYASQSPVN NIQELVNGVR DDFRLNHYQP  360
QKQVPMQIDF SGATSRPSVV ARPVGADSEN SDAEAPCKEE RPGTADERRP RKRGRKPANG  420
REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYINE LQAKLKVMEA  480
DRENLGGTSR DASALGANPG ISMENQSQAT DVDIQAVHDE VVVRVSCPLD SHPASRVIQA  540
FKEAQITVVE SKLDAANDTV FHTFVIKSQG SEPLTKEKLI AAFSRESNSL QSLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	416	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein