PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1124820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 828aa    MW: 90081.1 Da    PI: 6.3512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1124820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-21123178156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Pd.00g1124820.m01 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 178
                        688999***********************************************999 PP
2START206.79.1e-653305541206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l++++ +W e+++    + 
  Pd.00g1124820.m01 330 ELALAAMDELVKLAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMESN-RWLEMFPclvaRT 420
                        5899************************99***********9999899999***************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  + ++ +++lpSg+++++++ng+skv
  Pd.00g1124820.m01 421 STTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDTSGAPTFMNCRRLPSGCVVQDMPNGYSKV 512
                        ***************************************************************999************************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        twveh++++++++h+l+r++++sg+ +ga++wvatlqrqce+
  Pd.00g1124820.m01 513 TWVEHAEYDESQVHQLYRPMLSSGMGFGAQRWVATLQRQCEC 554
                        ****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    
MSFGGFLDNS TGSGGGARIV ADISYNNTSS STHSNNMPSS ALAQPRLVTQ SLTKSMFNSP  60
GLSLALTNAD GQGDVTRMAE NFETNVGRRS REEEHESRSG SDNMDGGSGD DQDAADNTNP  120
RKKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSRRLC LETRQVKFWF QNRRTQMKTQ  180
LERHENSLLR QENDKLRAEN MSIRDAMRNP ICSNCGGPAI IGEISLEEQH LRIENARLKD  240
ELDRVCALAG KFLGRPISSL ATSMGPPLPS STLELGVGSN GFGGLSSVAT SMPVGPDFGG  300
GIGSAMSVVP HSRPSVTGLD RSMERSMFLE LALAAMDELV KLAQTDEPLW LRSLEGGREV  360
LNHEEYMRSF TPCIGLKPNG FVTEASRETG MVIINSLALV ETLMESNRWL EMFPCLVART  420
STTDVISSGM GGTRNGALQL MHAELQVLSP LVPVREVNFL RFCKQHAEGV WAVVDVSVDT  480
IRDTSGAPTF MNCRRLPSGC VVQDMPNGYS KVTWVEHAEY DESQVHQLYR PMLSSGMGFG  540
AQRWVATLQR QCECLAILMS SSVPTRDHTA ITASGRRSML KLAQRMTDNF CAGVCASTVH  600
KWNKLNARNV DEDVRVMTRE SLDDPGEPPG IVLSAATSVW LPVSPQRLFD FLRDERLRSE  660
WDILSNGGPM QEMAHIAKGQ DPGNCVSLLR ARAMNANQSS MLILQETCID AAGGLVVYAP  720
VDIPAMHVVM NGGDSAYVAL LPSGFAIVPD GPGSRGPMTV KGGGHGSSNG GGGEDATHRV  780
SGSLLTMTFQ ILVNSLPSAK LTVESVETVN NLISCTVQKI KAALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein