PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1123170.m01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 1070aa    MW: 118290 Da    PI: 8.0172
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1123170.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.8e-41145222178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Pd.00g1123170.m01 145 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222
                        6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    
MEDVGGQVAA PIFLHQTLSG RFCDVPAMAR KRDLPYQGSN YQHPHSQQPR FTTAGNNWNP  60
NVWDWDNVRF VAKPLDAEML HLGSSRTEQG KKEEASGAVK NTAEDEDDES LQLNLAGGLT  120
SVEEPVPRPN KRVRSGSPGN GSYPMCQVDN CKEDLSNAKD YHRRHKVCEI HSKATKAPVA  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLT LPGDGDNKSI  240
GNLDIVNLLA AITRPQGKND VRNINCSSVL DREQLLQILS KINSLPLPAD LAAKLPNLGS  300
LNRKAAELLA LDLQNKLNGR TSSSTVDLLT VLSATLAASS PEALAMLSQK SSQSSDSEKT  360
KLTCSDQAAG PNLHKIPTQE FNSAGGERSS TSYQSPMEDS DCQVQETRVN LPLQLFSSSP  420
ENDSPPKLAS SRKYFSSDSS NPTEDRSPSS SPPVVQTLFP MKSMAETVKS EKLSVSKEVN  480
ANPDSSRTRG CNMPFDLFRG SNRGADASSI QSFPHQAGYT SSGSDHSPSS LNSDPQDRTG  540
RILFKLFDKD PSHLPGSLRT QIYNWLSNSP SEMESYIRPG CVVLSVYVSM SSAAWEQFEG  600
NLVQRVSSLV QSSDSDFWRS GRFLVHTGRQ LASHKDGKIR ICKAWRSCSS PELISVSPLA  660
VVGGQETSLV LRGRNLTNLG TRIHCTYLGG YTSKEATGST YHGTMYDEIN LGSFQVHDAS  720
PGVLGRCFIE VENGFKGNSF PVIIADASIC RELRLLESVF DAEAKACDVI SEDENRDYGR  780
PTSREEVLHF LNELGWLFQR KRICSMLQEP RYSLSRLKFL LTFTVEKDCC VLVKTLLDIL  840
FERNLDGDGL LGESLGMLSD IQLLNRAVKR RCRKMVDLLV NYSVISSDKR YIFPPNLAGP  900
GGMTPLHLAA CMSNTDDMID ALTNDPQEIG LNCWNSLLDA NGQSPYAYSL MRNNYSYNKL  960
VARKLADRRN SQVTVTIGNE IEQPQMTMEL EHRTSTQFRQ GSGSCAKCAM AASKYRRRVP  1020
GAQGLLQRPF IHSMLGIAAV CVCVCLFLRG SPDIGLVAPF KWENLDFGTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1866871RAVKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0SBP family protein