PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1123170.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 1070aa MW: 118290 Da PI: 8.0172 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 9.8e-41 | 145 | 222 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Pd.00g1123170.m01 145 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1070 aa Download sequence |
MEDVGGQVAA PIFLHQTLSG RFCDVPAMAR KRDLPYQGSN YQHPHSQQPR FTTAGNNWNP 60 NVWDWDNVRF VAKPLDAEML HLGSSRTEQG KKEEASGAVK NTAEDEDDES LQLNLAGGLT 120 SVEEPVPRPN KRVRSGSPGN GSYPMCQVDN CKEDLSNAKD YHRRHKVCEI HSKATKAPVA 180 KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLT LPGDGDNKSI 240 GNLDIVNLLA AITRPQGKND VRNINCSSVL DREQLLQILS KINSLPLPAD LAAKLPNLGS 300 LNRKAAELLA LDLQNKLNGR TSSSTVDLLT VLSATLAASS PEALAMLSQK SSQSSDSEKT 360 KLTCSDQAAG PNLHKIPTQE FNSAGGERSS TSYQSPMEDS DCQVQETRVN LPLQLFSSSP 420 ENDSPPKLAS SRKYFSSDSS NPTEDRSPSS SPPVVQTLFP MKSMAETVKS EKLSVSKEVN 480 ANPDSSRTRG CNMPFDLFRG SNRGADASSI QSFPHQAGYT SSGSDHSPSS LNSDPQDRTG 540 RILFKLFDKD PSHLPGSLRT QIYNWLSNSP SEMESYIRPG CVVLSVYVSM SSAAWEQFEG 600 NLVQRVSSLV QSSDSDFWRS GRFLVHTGRQ LASHKDGKIR ICKAWRSCSS PELISVSPLA 660 VVGGQETSLV LRGRNLTNLG TRIHCTYLGG YTSKEATGST YHGTMYDEIN LGSFQVHDAS 720 PGVLGRCFIE VENGFKGNSF PVIIADASIC RELRLLESVF DAEAKACDVI SEDENRDYGR 780 PTSREEVLHF LNELGWLFQR KRICSMLQEP RYSLSRLKFL LTFTVEKDCC VLVKTLLDIL 840 FERNLDGDGL LGESLGMLSD IQLLNRAVKR RCRKMVDLLV NYSVISSDKR YIFPPNLAGP 900 GGMTPLHLAA CMSNTDDMID ALTNDPQEIG LNCWNSLLDA NGQSPYAYSL MRNNYSYNKL 960 VARKLADRRN SQVTVTIGNE IEQPQMTMEL EHRTSTQFRQ GSGSCAKCAM AASKYRRRVP 1020 GAQGLLQRPF IHSMLGIAAV CVCVCLFLRG SPDIGLVAPF KWENLDFGTI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 866 | 871 | RAVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | SBP family protein |