PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1119820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 314aa    MW: 36410.4 Da    PI: 8.3481
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1119820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-122068155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a  +++g
  Pd.00g1119820.m01 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIRFRG 68
                       78****9888.8*********3.....5*********************999887 PP
2B395.14.7e-30152254198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+kv tpsdv++++r+v+pk+ ae+h     +  +e  +++ l +ed +g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F+++
  Pd.00g1119820.m01 152 FEKVATPSDVGRLNRMVIPKQQAEKHfpshlS--EElcKGVLLNFEDGEGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFERS 241
                        89*************************99552..44448899************************************************99 PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +e+++++  + 
  Pd.00g1119820.m01 242 RGEEKKMFIDCRP 254
                        8899989888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MDVLNESISE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD  60
IASIRFRGLE TITNFNQNQV KPYMDNDKET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK  120
LFNAGDEDAA RKRIKCHVNL MEGYDHQREW LFEKVATPSD VGRLNRMVIP KQQAEKHFPS  180
HLSEELCKGV LLNFEDGEGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER  240
SRGEEKKMFI DCRPRNVEVS GLGEMASRVE VEEPLSRVQV DDGVVRLFGV NIVETCSCIV  300
DNNMRWRLGE RISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-103RAV family protein