PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1115070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 671aa MW: 76959.5 Da PI: 9.3615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1115070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.3e-11	9	60	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR++++ +++L +l+P++ +s+ s + L Av+YIk+Lq Pd.00g1115070.m01 9 RADRKTIEKNRRNQMKALYSKLNSLVPHQ---RSREvTSLPDQLDDAVNYIKKLQ 60 667789********************9...88998***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MEHCPSSSRA DRKTIEKNRR NQMKALYSKL NSLVPHQRSR EVTSLPDQLD DAVNYIKKLQ 60 TNLEKMREKK ECLMGTEKNG NNNAGFVGGE VMGGLKSPQI EIEIQEMGSA LQVVLITGLD 120 YQFMFNESIR VLHEEGADIV NASFSIVEDT IFHTIHSKIG ESAPGPVAAR ISERLKKLLG 180 RIADWTRTFN NPARSKNPSD SVFDFSNDES FPASADDDAS FRLVDGKPPP RPRFGPKWRF 240 QQQRQLPHRR DEEVEAKKRE AEKERARRDR QYNMNRSNVN VPRREAAVFK SSVDIQPEWN 300 MLDQIPFSTF SKLSFSVPEP EDLLLCGGLE FYDRSCDRIT PKNERRLERF KNRNFFKVTT 360 TDDPVIRRLA NEDKATVFAT DTILSTLMCA PRSIYSWDIV VQRVGNKLFF DKRDGSQLDL 420 LSVHETSQEP LPEAKDDINS AYSLSVEAAY INQNFSQQVL IRDGNKVTFD EPNPFANEGE 480 EVASVAYRYR RWKLEEGMYL VARCEVQSVM EVNNQRSFLT LNALNEFDPK YSGVDWRQKL 540 ETQRGAVLAT ELKNNANKLA KWTAQALLAS ADLMKLGYVS RVHPRDHFNH VILAVVGYKP 600 KEFASQINLN TNSMWGIVKS IVDLCMKLNE GKYVLVKDPS KPQRIRRLRL LKLKGLKPIS 660 QLVRMETWLQ L

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MEHCPSSSRA DRKTIEKNRR NQMKALYSKL NSLVPHQRSR EVTSLPDQLD DAVNYIKKLQ  60
TNLEKMREKK ECLMGTEKNG NNNAGFVGGE VMGGLKSPQI EIEIQEMGSA LQVVLITGLD  120
YQFMFNESIR VLHEEGADIV NASFSIVEDT IFHTIHSKIG ESAPGPVAAR ISERLKKLLG  180
RIADWTRTFN NPARSKNPSD SVFDFSNDES FPASADDDAS FRLVDGKPPP RPRFGPKWRF  240
QQQRQLPHRR DEEVEAKKRE AEKERARRDR QYNMNRSNVN VPRREAAVFK SSVDIQPEWN  300
MLDQIPFSTF SKLSFSVPEP EDLLLCGGLE FYDRSCDRIT PKNERRLERF KNRNFFKVTT  360
TDDPVIRRLA NEDKATVFAT DTILSTLMCA PRSIYSWDIV VQRVGNKLFF DKRDGSQLDL  420
LSVHETSQEP LPEAKDDINS AYSLSVEAAY INQNFSQQVL IRDGNKVTFD EPNPFANEGE  480
EVASVAYRYR RWKLEEGMYL VARCEVQSVM EVNNQRSFLT LNALNEFDPK YSGVDWRQKL  540
ETQRGAVLAT ELKNNANKLA KWTAQALLAS ADLMKLGYVS RVHPRDHFNH VILAVVGYKP  600
KEFASQINLN TNSMWGIVKS IVDLCMKLNE GKYVLVKDPS KPQRIRRLRL LKLKGLKPIS  660
QLVRMETWLQ L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-45	bHLH family protein