PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1108090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32132.9 Da PI: 8.2936 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 86 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Pd.00g1108090.m01 86 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130 8*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence |
MAGTCSTVEP AGAGEIMLFG VRVVVDSMRK SVSLNNLSQY EQPQEGSNNN SGNNTIAGKD 60 DVAGYASEND VVHNSAGNRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWRGI SRNFVKTRTP 120 TQVASHAQKY FLRRSNHNRR RRRSSLFDIT TDTVTATPMD EEQVHHQNNT SQSHPLPPPP 180 PSEACNPSGF SMVPNFPLTV GPAVLPVPIE NPMGNLTLGH ANLENNASAK LVRPIALHSA 240 PHATAMSDLN LKSTMDTSTL TLNLSLSMDP RESSSRHSAF QAMPSFSNGD SIISVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19000.1 | 4e-59 | MYB_related family protein |