PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1106920.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 50598.9 Da PI: 8.9194 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 47 | 71 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG rC+++H++ Pd.00g1106920.m01 47 VPHCVYYMRTGFCGYGIRCRYNHPR 71 566********************96 PP | |||||||
2 | zf-CCCH | 40.9 | 3.4e-13 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pd.00g1106920.m01 92 EPICQYYLKTGTCKFGASCKFHHPK 116 799********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.9e-12 | 137 | 162 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Pd.00g1106920.m01 137 GENECSYYLKTGQCKFGITCKFHHPQ 162 6789********************97 PP | |||||||
4 | zf-CCCH | 36.9 | 6.1e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ Pd.00g1106920.m01 293 PGEPECQYYLKTGDCKYGPSCRYHHPR 319 5799*********************96 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 340 | 364 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Pd.00g1106920.m01 340 GVQPCTFYLQNGHCKFGSTCKFDHP 364 6789********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence |
MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPHC VYYMRTGFCG 60 YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG 120 SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ 180 SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL 240 SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY 300 YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK 360 FDHPIGTMRY NPSASSLVDM PVTPYPVGSL LATLAPSSSS TDLRPELISS SKKDTYSTRV 420 PSSGNTSSSS VGLIFSQSGS VSLSDVQHTS QTSVPLSSSR STRQGGEVRR SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |