PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1105300.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93004.8 Da    PI: 6.2474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1105300.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182179357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pd.00g1105300.m01 21 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                       6789*****************************************************97 PP
2START168.54.4e-531703762203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++  ++l  i  g  g++
  Pd.00g1105300.m01 170 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCLDVLSLIPAGngGTI 260
                        68999*****************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl+++++++
  Pd.00g1105300.m01 261 ELTYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPE 352
                        *******************************************99999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        +lrsl++s+ + ++k++ ++l++ 
  Pd.00g1105300.m01 353 VLRSLYESSKILAQKMTISALRHI 376
                        ******************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MALVMNRDSP GSSSKQMDSS KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KESSRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENGF  120
MRQQLHSASG TTTDNSCESV VMSGQHQQQQ NPTPQHPQRD ANNPAGLLAI AEETLAEFLS  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRTSWF  240
RDCRCLDVLS LIPAGNGGTI ELTYMQTYAP TTLAAARDFW TLRYTTSLED GSLVVCERSL  300
TSSTGGPTGP PSASFVRAEM LPSGYLIRPC EGGGSIINIV DHVDLDAWSV PEVLRSLYES  360
SKILAQKMTI SALRHIRQIA QETSGEIQYG GGRQPAVLRT FCQRLCRGFN DAVNGFADDG  420
WSLMGSDGVE DVTITINSSP NKFLGSQYNA SIFPTFGGGV LCAKASMLLQ SVPPALLVRF  480
LREHRSEWAD YGVDAYSAAC LKASPYAVPC ARPGGFPSSQ VILPLAQTVE NEEFLEVVRL  540
EGHAFSPEDV ALARDMYLLQ LCSGVDENAV GSCAQLVFAP IDESFADDAP LLPSGFHVIP  600
LDPKTDGPTA NRTLDLASTL EVGPSGSRPV NEADGNSYNL RSVLTIAFQF TFENHLRDNV  660
AAMARQYVRS VVSSVQRVAM AIAPSRLSSQ MVPKPLPGSP EAHTLARWIC RSYRIHTGAD  720
LFRVDSPSGD AVLKQLWHHS DAIMCCSVKT NASPVFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEAGRKI LCSEFSKIMQ QGFAYLPAGL CASSMGRPVS YDQAVAWKVV NDDDSNHCLA  840
FMFMSWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein