PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1099550.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82070.6 Da    PI: 6.3344
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1099550.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2071126156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pd.00g1099550.m01  71 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 126
                        789999***********************************************998 PP
2START2213.8e-692634861206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
              START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                        ela +a++el+++a+a+ep+Wv          e++n++e+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ qW++ +    
  Pd.00g1099550.m01 263 ELAVAAMEELIRMAQAGEPLWVPGDhnsshnhEILNEEEYLRTFPRGIGptplgLKSEASRESALVIMNHVNLVEILMDVN-QWSTVFCgiv 353
                        57899*****************77677789****************999********************************.******9999 PP

                        .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
              START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                         +a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+
  Pd.00g1099550.m01 354 sRAMTLDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPSP----VSRSRRRPSGCLIQELPNGY 441
                        9*****************************************************************98....79****************** PP

                        EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        skv+wvehv++++r++h+++r+lv+sgla+gak+wvatl+rqce+
  Pd.00g1099550.m01 442 SKVIWVEHVEVDDRSVHNIYRPLVNSGLAFGAKRWVATLDRQCER 486
                        *******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MYQPSMFENH HHILDHMTAS STHKTSESTE VLGKSRLLDD DFETKSGTET TTDAPSGDEQ  60
DPNNTGPRPK RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN  120
KRTQMKAQHE RHENSILKSE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR  180
IENARLREEI DRISSIAAKY VGKPLSSSFS SHIPPHVPSR SLDLGVGSFG AQSGFVGEMY  240
GSSSDLLRSV SVPTDADKPM IVELAVAAME ELIRMAQAGE PLWVPGDHNS SHNHEILNEE  300
EYLRTFPRGI GPTPLGLKSE ASRESALVIM NHVNLVEILM DVNQWSTVFC GIVSRAMTLD  360
ILSTGVAGNY NGALQVMTAE FQVPSPLVPT RENYFVRYCK QHVDGTWAVV DVSLDNLRPS  420
PVSRSRRRPS GCLIQELPNG YSKVIWVEHV EVDDRSVHNI YRPLVNSGLA FGAKRWVATL  480
DRQCERLASS MASNIPAGDL CVITSPEGRK SMLKLAQRMV MSFCTGVGAS TAHAWTTLSA  540
TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWIPVPPKRV FDFLRDENSR TEWDILSNGG  600
LVQEMAHIAN GRDPGNSVSL LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDIVAMNV  660
VLSGGDPDYV ALLPSGFAIL PDGPTGHAGG GGGGILDVGS GGSLLTVAFQ ILVDSVPTAK  720
LSLGSVATVN NLIKCTVERI RAAVTCEQNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein