PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1098600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 368aa MW: 42215.6 Da PI: 6.317

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1098600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Pd.00g1098600.m01 14 KGPWTPEEDEKLLDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Pd.00g1098600.m01 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDEKLLDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDFSSILS SSLYNSSHQH QMNFSRLLGQ PIGLNPELLR LATSLIQSQR 180 ENNHNSNSFL LQNSQETNNF HQLCNNPQIP FQQVQSNQLQ QPIQEISFSN EAPQLIMHPA 240 NGDYPSNLSD FRSQNSQPSD WQQSNVGPSN FTDEYVELPN FAYEYGSDHH QTILDPSPET 300 SNFHSNNSNQ NFSFTTSVLS TPSSSPTPLN SNSTTHNFNS STEDERESYC SNMLKFDIQD 360 MLDVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDEKLLDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDFSSILS SSLYNSSHQH QMNFSRLLGQ PIGLNPELLR LATSLIQSQR  180
ENNHNSNSFL LQNSQETNNF HQLCNNPQIP FQQVQSNQLQ QPIQEISFSN EAPQLIMHPA  240
NGDYPSNLSD FRSQNSQPSD WQQSNVGPSN FTDEYVELPN FAYEYGSDHH QTILDPSPET  300
SNFHSNNSNQ NFSFTTSVLS TPSSSPTPLN SNSTTHNFNS STEDERESYC SNMLKFDIQD  360
MLDVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-102	MYB family protein