PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1093940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 495aa MW: 54148.6 Da PI: 7.5682

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1093940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.9	1.4e-38	142	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS......SEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs......rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCs rfh l+efDe+krsCrrrLa+hn+rrrk+++ Pd.00g1093940.m01 142 VCQVEDCKADLSNAKDYHRRHKVCDMHSKASTALVGNAMQRFCQQCSrvtpmdRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6*******************************************95555555*************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE 60 TPSNAGLSNS SSSGLDNISP GNEKGKRELE KRRRGVFVEN EVHDEAGSLN LNLGGQAYPI 120 MEGEVQTGKK TKIVGTTSNR AVCQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM 180 QRFCQQCSRV TPMDRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTTAN GGSLNDERGS 240 SYLLISLLSI LSNMHSTSSD QTKDQDLLSH LLRSLANLAG TADGRNISTL LQGSQGLFNS 300 GTSVQITKVP DMDDGVNLED LRPVGQCSVV PASDMLERRI SSVDDPGSLQ VLSGLQATEP 360 LPSRDSSESK SVTPEATSRR FQLNGIDLNN TYDDSQDYLE NLGNSHVPAS PGTASLGFSS 420 WMQRDSHKSS PPQTSGNSDL TSTQSPSSSS GEAQDRRGRR SQAGNMEAGS LKDNSDTDRS 480 DNPDIRADSR RNYRK

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE  60
TPSNAGLSNS SSSGLDNISP GNEKGKRELE KRRRGVFVEN EVHDEAGSLN LNLGGQAYPI  120
MEGEVQTGKK TKIVGTTSNR AVCQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM  180
QRFCQQCSRV TPMDRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTTAN GGSLNDERGS  240
SYLLISLLSI LSNMHSTSSD QTKDQDLLSH LLRSLANLAG TADGRNISTL LQGSQGLFNS  300
GTSVQITKVP DMDDGVNLED LRPVGQCSVV PASDMLERRI SSVDDPGSLQ VLSGLQATEP  360
LPSRDSSESK SVTPEATSRR FQLNGIDLNN TYDDSQDYLE NLGNSHVPAS PGTASLGFSS  420
WMQRDSHKSS PPQTSGNSDL TSTQSPSSSS GEAQDRRGRR SQAGNMEAGS LKDNSDTDRS  480
DNPDIRADSR RNYRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	132	KRRRGVFVENEVHDEAGSLNLNLGGQAYPIMEGEVQTGKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	7e-58	SBP family protein