PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1089380.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 24243.8 Da    PI: 9.1336
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1089380.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.3e-30959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl+ey++
  Pd.00g1089380.m01  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALVVFSNKGKLFEYAT 59
                       79***********************************************86 PP
2K-box100.62.2e-33791745100
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        + ++ + + + +++ e+++Lk+++e Lqr+qRh+lGedL+sL+lke+q+Le+qLe++lk+iR +Kn+l++e+i++lq+ke+++qe+n+ L k
  Pd.00g1089380.m01  79 QLVEPDFESQCNWNFEYSRLKAKVELLQRNQRHYLGEDLDSLTLKEIQSLEHQLETALKQIRLRKNQLMHESISDLQRKERAMQEQNNLLAK 170
                        555545556779******************************************************************************** PP

              K-box  97 klee 100
                        k++e
  Pd.00g1089380.m01 171 KIKE 174
                        *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALVVFSN KGKLFEYATD  60
SCMDQILDRY ERYSYAEKQL VEPDFESQCN WNFEYSRLKA KVELLQRNQR HYLGEDLDSL  120
TLKEIQSLEH QLETALKQIR LRKNQLMHES ISDLQRKERA MQEQNNLLAK KIKEKEKAAA  180
EEVHNWEQQN NGLNLLPQPL PCLNMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-94MIKC_MADS family protein