PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1087610.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 348aa    MW: 39359.7 Da    PI: 4.246
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1087610.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.47.9e-25260310252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        +++++l+dl+ y +lpi++AA+ L+vc+Tv+KriCR++G++RWP+Rki+s+
  Pd.00g1087610.m01 260 TANMTLDDLRDYVHLPIEKAARRLNVCPTVVKRICRRNGLRRWPSRKITSI 310
                        789*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MLLLLRDLAG AIGARKDGRG ERDFGCSQIE REREEEEDEA QCLVERYNLR MADPRAVVPY  60
HDPYDSGPYT EIMNLLNDSE HPRIDENNIP PLEGSLASPN PTPMFDEEIQ DVDEPLMDQA  120
MWDFIYGSGN GGEGINSQAG PSQIFTESSG TNPPRGDGNE QNFGNTPGEE VKQFLMQYCL  180
ERKLEGYIMQ QDPLTFFYEA LCVGVDWDAI LNPTDDFDFP PSPPDSGGDM EKPAAVQPEA  240
AEHEIETNPR ISLAEQRERT ANMTLDDLRD YVHLPIEKAA RRLNVCPTVV KRICRRNGLR  300
RWPSRKITSI NRQISRLRPS LDSDDAETRV HAEAEISRLE REIAELVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.18e-15Nin-like family protein