PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1087030.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 1260aa MW: 137360 Da PI: 7.5372

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1087030.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.4	1.8e-17	178	211	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+t +TplWR+gp g+k+LCnaCG+++rk + Pd.00g1087030.m01 178 CSDCHTNSTPLWRSGPLGPKSLCNACGIRQRKAR 211 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1260 aa Download sequence
MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF 60 TSLAHHQSQL YHHKDKNIWD CGTSYDQASS SSSLVQAHVV DAISNKDRRL SRCVKRMSSK 120 MRLMQKMTSN NPDLPPGTTD HIPAEISEHK FQIHAQPREI RETSFSSNSN NTAAVRVCSD 180 CHTNSTPLWR SGPLGPKSLC NACGIRQRKA RRAMAEAAAA AANGFAVSSA DTSSPKESFA 240 LMERARRLAN QAFVRRLVSD AKQFRQNETV FSSSTSPVLY TPSRYVSSLS PCSFMRTSSR 300 SDSLAGKNVS HNVGYGTGTQ TRSISVDALK NSDTFPRRHN SATPDEQTKM AEICGFGSLD 360 SLIDATVPKS IRLESMKFTK FDEGLTESQM LEHMQYLASK NKIFKSFIGM GYYNTYVPPV 420 ILRNIMENPA WYTQYTPYQA EISQGRLESL LNFQTLITDL TGLPMSNASL LDEGTAAAEA 480 MAMCNNIQKG KKKTFVIANN CHPQTIDICK TRADGFDLKV VTADLKDIDY KSGDVCGVLV 540 QYPGTEGEVL DYGEFIKNAH VNGVKVVMAT DLLALTLLKP PGEFGADIVV GSAQRFGVPM 600 GYGGPHAAFL ATSQEYKRMM PGRIIGLSVD SSGKPALRMA MQTREQHIRR DKATSNICTA 660 QALLANMAAM YAVYHGPEGL KTISQRVHGL AGAFAVGLKK LGTVEVQGLP FFDTVKVKTS 720 DAHAIADAAI KHGINLRVVD TNTITASFDE TTTLEDVDKL FKVFALGKPV PFTAASLAPE 780 VQPAIPSGLT RESPYLTHPI FNSYHTEHEL LRYIHRLQSK DLSLCHKQAA GYQEMFKDLG 840 DLLCTLTGFD SFSLQPNAGA AGEYAGLMVI RAYHFARGDH HRNVCIIPVS AHGTNPASAA 900 MCGMKIVTIG TDAKGNINIE ELRKAAETNK DNLSALMVTY PSTHGVYEEG IDEICKIIHD 960 NGGQVYMDGA NMNAQVGLTS PGWIGADVCH LNLHKTFCIP HGGGGPGMGP IGVKKHLAPF 1020 LPSHPVVPTG GFPAPDKSQP LGTISAAPWG SALILPISYT YIAMMGSKGL TDASKIAILN 1080 ANYMAKRLED YYPILFRGVN GTVAHEFIVD LRGFKHTAGI EPEDVAKRLM DYGFHGPTMS 1140 WPVPGTLMIE PTESESKAEL DRFCDALISI REEIAEIEKG KADLHNNVLK GAPHPPSLLM 1200 GDAWTKPYSR EYAAFPASWL RSAKFWPTTG RVDNVYGDRN LICTLQPASQ AVEEQAAATA

Sequence ? help Back to Top

Protein Sequence Length: 1260 aa Download sequence

MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF  60
TSLAHHQSQL YHHKDKNIWD CGTSYDQASS SSSLVQAHVV DAISNKDRRL SRCVKRMSSK  120
MRLMQKMTSN NPDLPPGTTD HIPAEISEHK FQIHAQPREI RETSFSSNSN NTAAVRVCSD  180
CHTNSTPLWR SGPLGPKSLC NACGIRQRKA RRAMAEAAAA AANGFAVSSA DTSSPKESFA  240
LMERARRLAN QAFVRRLVSD AKQFRQNETV FSSSTSPVLY TPSRYVSSLS PCSFMRTSSR  300
SDSLAGKNVS HNVGYGTGTQ TRSISVDALK NSDTFPRRHN SATPDEQTKM AEICGFGSLD  360
SLIDATVPKS IRLESMKFTK FDEGLTESQM LEHMQYLASK NKIFKSFIGM GYYNTYVPPV  420
ILRNIMENPA WYTQYTPYQA EISQGRLESL LNFQTLITDL TGLPMSNASL LDEGTAAAEA  480
MAMCNNIQKG KKKTFVIANN CHPQTIDICK TRADGFDLKV VTADLKDIDY KSGDVCGVLV  540
QYPGTEGEVL DYGEFIKNAH VNGVKVVMAT DLLALTLLKP PGEFGADIVV GSAQRFGVPM  600
GYGGPHAAFL ATSQEYKRMM PGRIIGLSVD SSGKPALRMA MQTREQHIRR DKATSNICTA  660
QALLANMAAM YAVYHGPEGL KTISQRVHGL AGAFAVGLKK LGTVEVQGLP FFDTVKVKTS  720
DAHAIADAAI KHGINLRVVD TNTITASFDE TTTLEDVDKL FKVFALGKPV PFTAASLAPE  780
VQPAIPSGLT RESPYLTHPI FNSYHTEHEL LRYIHRLQSK DLSLCHKQAA GYQEMFKDLG  840
DLLCTLTGFD SFSLQPNAGA AGEYAGLMVI RAYHFARGDH HRNVCIIPVS AHGTNPASAA  900
MCGMKIVTIG TDAKGNINIE ELRKAAETNK DNLSALMVTY PSTHGVYEEG IDEICKIIHD  960
NGGQVYMDGA NMNAQVGLTS PGWIGADVCH LNLHKTFCIP HGGGGPGMGP IGVKKHLAPF  1020
LPSHPVVPTG GFPAPDKSQP LGTISAAPWG SALILPISYT YIAMMGSKGL TDASKIAILN  1080
ANYMAKRLED YYPILFRGVN GTVAHEFIVD LRGFKHTAGI EPEDVAKRLM DYGFHGPTMS  1140
WPVPGTLMIE PTESESKAEL DRFCDALISI REEIAEIEKG KADLHNNVLK GAPHPPSLLM  1200
GDAWTKPYSR EYAAFPASWL RSAKFWPTTG RVDNVYGDRN LICTLQPASQ AVEEQAAATA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	8e-14	GATA family protein