PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1085520.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24166 Da    PI: 4.4003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1085520.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.5e-28249350
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       ien++nrqvt+skRrng+lKKA+ELSvLCd++va+i+fs++g+l  +s
  Pd.00g1085520.m01  2 IENTTNRQVTYSKRRNGLLKKAYELSVLCDVDVALIMFSPSGRLSLFS 49
                       9******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MIENTTNRQV TYSKRRNGLL KKAYELSVLC DVDVALIMFS PSGRLSLFSG NKSIEEILAR  60
YVNLPGHERG GRCSPISTDS DQLEQILEEY DSSATLVQVH PPPATTNVDE FVTASPQNIL  120
VDWLPQRDPQ VQILNFLNAN GLLPLRGEAQ SRLEVIAAPQ SSTLLHGINL EDQMNPGRGS  180
GLDDENNNTT LQRPELGQVI DVNLSPWNEF YQTSTSFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-33MIKC_MADS family protein