PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1070560.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 307aa    MW: 32860.4 Da    PI: 7.5737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1070560.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09279304530
                        HHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                        hn+ Er+RRd+iN+++ +L++l+P++
  Pd.00g1070560.m01 279 HNQSERKRRDKINQRMKTLQKLVPNS 304
                        9***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPPPSKPP FDSSGGGASG ELVSWFDHHR  120
ATAVRSTAVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS  180
GATGAATQDD DTKLSGKHGS LSNVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH  240
DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSSKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288ERKRRD
2284289RKRRDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-68bHLH family protein