PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1063850.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 464aa MW: 53834 Da PI: 10.9291

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1063850.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.7	2e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ Pd.00g1063850.m02 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52 6********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR 60 CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ 120 NELERLFGRY GKVDRVDMKS EYLHAIRGLD RKEFGRKGRR LRVEWTKVAN HERATRRPGA 180 SRRSSTNTRP SKTLFVINFD PYHTRTKDLE RHFDPYGKIV SVRIRRNFAF VQYESQEDAT 240 RALEATNMSK LMDRVISVEY AVRDDDERRD GFSPDRRSRD RSLDRGRDRR RSPSPYKRER 300 GSPDYGRGPS PGPYRRERGS PDYGRGPSPY RRERVSPDYG RGRSPSPYRR ERSDHGRISS 360 RSPRKERRDR DSPENGAIES PYKRDRASPE NGAIQSPYKR DRSSPENGRG PSSSPYERER 420 VSPEHGRGPS PNSVPEARGD SPNYGGPESP MQERYSSRSP QAEE

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS EYLHAIRGLD RKEFGRKGRR LRVEWTKVAN HERATRRPGA  180
SRRSSTNTRP SKTLFVINFD PYHTRTKDLE RHFDPYGKIV SVRIRRNFAF VQYESQEDAT  240
RALEATNMSK LMDRVISVEY AVRDDDERRD GFSPDRRSRD RSLDRGRDRR RSPSPYKRER  300
GSPDYGRGPS PGPYRRERGS PDYGRGPSPY RRERVSPDYG RGRSPSPYRR ERSDHGRISS  360
RSPRKERRDR DSPENGAIES PYKRDRASPE NGAIQSPYKR DRSSPENGRG PSSSPYERER  420
VSPEHGRGPS PNSVPEARGD SPNYGGPESP MQERYSSRSP QAEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	5e-24	LBD family protein