PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1063850.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 461aa    MW: 53549.7 Da    PI: 10.9291
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1063850.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.71.9e-19552148
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48
                       +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ 
  Pd.00g1063850.m01  5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52
                       6********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS EYLHAIRGLD RKEFGRKGRR LRVEWTKHER ATRRPGASRR  180
SSTNTRPSKT LFVINFDPYH TRTKDLERHF DPYGKIVSVR IRRNFAFVQY ESQEDATRAL  240
EATNMSKLMD RVISVEYAVR DDDERRDGFS PDRRSRDRSL DRGRDRRRSP SPYKRERGSP  300
DYGRGPSPGP YRRERGSPDY GRGPSPYRRE RVSPDYGRGR SPSPYRRERS DHGRISSRSP  360
RKERRDRDSP ENGAIESPYK RDRASPENGA IQSPYKRDRS SPENGRGPSS SPYERERVSP  420
EHGRGPSPNS VPEARGDSPN YGGPESPMQE RYSSRSPQAE E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.15e-24LBD family protein