PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1058990.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 472aa MW: 54782 Da PI: 10.7535

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1058990.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.5	2.2e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ Pd.00g1058990.m02 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52 6********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR 60 CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ 120 NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKHE 180 RGTRRPGASR RSSTNTRPSK TLFVINFDPY HTRTKDLERH FDPYGKIVSV RIRRNFAFVQ 240 YESQEDATRA LEATNMSKLM DRVISVEYAV RDDDERRDGF SPDRRSRDRS LDRGRDRRRS 300 PSPYKRERGS PDYGRGPSPG PYRRERGSPD YGRGPSPYRR ERVSPDYGRG RSPSPYRRER 360 SDHGRISSRS PRKERRVRDS PENGAIESPY KRDRGSPENG AIQSPYKRDR SSPENGRGPS 420 SSPYERERVS PEHGHGPSPN SVPEARGDSP NYGGPESPMQ ERYSSRSPQA EE

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKHE  180
RGTRRPGASR RSSTNTRPSK TLFVINFDPY HTRTKDLERH FDPYGKIVSV RIRRNFAFVQ  240
YESQEDATRA LEATNMSKLM DRVISVEYAV RDDDERRDGF SPDRRSRDRS LDRGRDRRRS  300
PSPYKRERGS PDYGRGPSPG PYRRERGSPD YGRGPSPYRR ERVSPDYGRG RSPSPYRRER  360
SDHGRISSRS PRKERRVRDS PENGAIESPY KRDRGSPENG AIQSPYKRDR SSPENGRGPS  420
SSPYERERVS PEHGHGPSPN SVPEARGDSP NYGGPESPMQ ERYSSRSPQA EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	3e-24	LBD family protein