PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1058860.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 808aa MW: 88010.1 Da PI: 6.4213 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 117 | 172 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k Pd.00g1058860.m01 117 KKKYHRHTPSQIQELENFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 172 79999************************************************999 PP | |||||||
2 | START | 173.5 | 1.3e-54 | 327 | 548 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la +a++elvk+a+a++p+W k s e++n +e++ + + +e r++ +v+ ++ lve+l+d + +W e++ +a+++ Pd.00g1058860.m01 327 LAMAAMDELVKMAQADSPLWIKTSdggtEILNHEEYRAFSCIGTKpsnFVTEGTRDTCMVIINSLALVETLMDAN-RWAEMFSclvaRASVI 417 57799*******************99999999999987655544466679*************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +vis g galq+m aelq+lsplvp R f+R+++q+++g+w++vdvS++ +q+ +++ + ++++pSg+++++++n+ skvtw+ Pd.00g1058860.m01 418 DVISGGmggtrnGALQVMHAELQVLSPLVPvRPLKFLRFCKQHQEGVWAVVDVSIEINQEGSNTNAFLNCRRFPSGCIVQDMPNNCSKVTWI 509 ******************************************************************************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh +++++++h l+ +l++sg+ +ga++w+atlqrqce+ Pd.00g1058860.m01 510 EHSEYDENTVHHLFWQLLRSGMGFGAQRWLATLQRQCEC 548 *************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence |
MSFGGLISGG SGNSGGGGAR VVADIAPHTP YMPSGAIAQP HFLTSPVPNS MRSSSALSLS 60 VKNMDGHSEL GLIAENFDPG IIGRMRDDEY ESRSGSDNFE GASGDDQDAG DEQRPRKKKY 120 HRHTPSQIQE LENFFKECPH PDEKQRLELS RRLSLETKQV KFWFQNRRTQ MKTQLERHEN 180 IILRQENDKL RAENGVMKDA MANPVCNSCG GPAIPGQISF EEHQLRIENA RLKDELNRIC 240 TLANKFLGRP ISSLASPISL PNSTSGLELG IGRNGIGGLS AGGSGLPMGL NLGDGVSSSS 300 PMMPLIKSST GMLGNEVPYE RSMYIDLAMA AMDELVKMAQ ADSPLWIKTS DGGTEILNHE 360 EYRAFSCIGT KPSNFVTEGT RDTCMVIINS LALVETLMDA NRWAEMFSCL VARASVIDVI 420 SGGMGGTRNG ALQVMHAELQ VLSPLVPVRP LKFLRFCKQH QEGVWAVVDV SIEINQEGSN 480 TNAFLNCRRF PSGCIVQDMP NNCSKVTWIE HSEYDENTVH HLFWQLLRSG MGFGAQRWLA 540 TLQRQCECLA FLISSTNSIE DHTGLGTNGK KSMLKLAQRM IDNFCAGVSA SSVRKWDKLC 600 VNNVSEDLRV MARKSVDDPG EPAGIVLSGS TSVWLPVSRH RLFDFLRDEQ LRDQWDVLSK 660 THKMQLMLRI AKSQGGGNCV SLLRANVVDA NENTMLMLQE SWSDASGSLV VYAPVDPASM 720 SAVMRGGDSA YVALLPSGFA ILPGGPPGYG MVKTEGNGCD DGGCFLTVGF QILGSNYPAA 780 KLDVQSINTV NTLVSHTIEK IKSALQVP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | HD-ZIP family protein |