PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1057880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 320aa    MW: 34898.4 Da    PI: 8.77
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1057880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-1260104147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pd.00g1057880.m01  60 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104
                        789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MVSKNPDPPE GLYLDPSGMA LPGLGPFASV TTSATTTSTT SSSEDLSKKI RKPYTITKSR  60
ESWSEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP  120
RPKRKAAHPY PQKASKNALG LPQVSGSCQS SSALHESGFI QRPDSASMLM SPVPGTVVPS  180
WTDGSMQTAN LSHESKGPTA PNNSCSSTES TPKAQPVGVT TDLVIRSHAL RVLPDFSQVY  240
SFIGSVFDPD VTGHLQKLKK MDPIDVDTVL LLMRNLSINL SSPDFEDHRK LLSSYKIDAD  300
TASHGDATKS LCDDQHKKVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-112MYB_related family protein