PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g105380.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 569aa MW: 64440.9 Da PI: 7.4094

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g105380.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.2e-40	53	130	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C adls+ak+yhrrhkvC+ hska+vvlvsgl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++ Pd.00g105380.m01 53 CCQADRCPADLSDAKQYHRRHKVCDLHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDTKRSCRRRLAGHNERRRKNSV 130 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MEKPHVVVKE EEEEDEEFDY HQQLEDHDKK QKGIVGGSGS VKRSGTSGGG TRCCQADRCP 60 ADLSDAKQYH RRHKVCDLHS KAQVVLVSGL RQRFCQQCSR FHELPEFDDT KRSCRRRLAG 120 HNERRRKNSV ESNAEGPSRT GTGTQLKDVC GQDSEGSPSS TSEEKPEFLF VQLPEIRKDV 180 HCPICLGIIK KTRTVMECLH RFCRECIDKS MRMGNNECPA CRTHCASRRS LRDDPNYDAL 240 IAALYPDIEK YEEEELAFHE EERTRNEQIQ ASIAQIFQRQ SEALIRRRSF GKDTPDAFIT 300 RSQRNNRSSF LRRRSSRATE IQGSVDNEDE NDNNNMGKNS SSTDERRTEV TPRRLRRRAG 360 SRCSQPSSSL ANSSGGCTEN DLEVNRENCG ISPGIVWSSE MLAWGRGGAR SHTRHGISSG 420 CSNKNSRSTR LSKLVDYLRS IEENNDELDV HLMLISLDKR CTPSLQQPHL CCRPSLSVKH 480 LCDYVSCQTP LLAEEVEFLA VKGYHSSNDE KLTLNPSSLM NDLDSAPLLV DPCRYDLQIL 540 QAEETLGGVK AICTSSRDHL ILAYRRKEI

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MEKPHVVVKE EEEEDEEFDY HQQLEDHDKK QKGIVGGSGS VKRSGTSGGG TRCCQADRCP  60
ADLSDAKQYH RRHKVCDLHS KAQVVLVSGL RQRFCQQCSR FHELPEFDDT KRSCRRRLAG  120
HNERRRKNSV ESNAEGPSRT GTGTQLKDVC GQDSEGSPSS TSEEKPEFLF VQLPEIRKDV  180
HCPICLGIIK KTRTVMECLH RFCRECIDKS MRMGNNECPA CRTHCASRRS LRDDPNYDAL  240
IAALYPDIEK YEEEELAFHE EERTRNEQIQ ASIAQIFQRQ SEALIRRRSF GKDTPDAFIT  300
RSQRNNRSSF LRRRSSRATE IQGSVDNEDE NDNNNMGKNS SSTDERRTEV TPRRLRRRAG  360
SRCSQPSSSL ANSSGGCTEN DLEVNRENCG ISPGIVWSSE MLAWGRGGAR SHTRHGISSG  420
CSNKNSRSTR LSKLVDYLRS IEENNDELDV HLMLISLDKR CTPSLQQPHL CCRPSLSVKH  480
LCDYVSCQTP LLAEEVEFLA VKGYHSSNDE KLTLNPSSLM NDLDSAPLLV DPCRYDLQIL  540
QAEETLGGVK AICTSSRDHL ILAYRRKEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	1e-41	SBP family protein