PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1044770.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 360aa MW: 39257.1 Da PI: 8.6282

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1044770.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	124	146	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H Pd.00g1044770.m01 124 SCPECGEIFMKAENLELHQAVrH 146 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEESNAAKKS KKMRCSGSLC NNTKIMHRPE IGSPEVHKKR ASMGSSNSNE TSSRSMKAPL 60 HELNGVVSTS SSSLSAVSNN SSVGAGSFRA MPFRRFSGCY ECRMVVDPVL GFARDPSLRG 120 SICSCPECGE IFMKAENLEL HQAVRHAVSE LGPEDTSKNI VEIIFQSSWL KKQTPICKID 180 RILKVHNTQK TISKFEEYRE SIKAKATKLP KKHPRCIADG NELLRFHSTT FVCSLGLNCS 240 SNLCNSIPHC NICSIIKNGF DKFSGDLIED GILTTATSGR AHDKAVVAAE DSGKRAMLVC 300 RVIAGRVKKN MEDSIGIGPI GMEEYDSVAG AVGVYSNLDE LYVFNPKAIL PCFVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEESNAAKKS KKMRCSGSLC NNTKIMHRPE IGSPEVHKKR ASMGSSNSNE TSSRSMKAPL  60
HELNGVVSTS SSSLSAVSNN SSVGAGSFRA MPFRRFSGCY ECRMVVDPVL GFARDPSLRG  120
SICSCPECGE IFMKAENLEL HQAVRHAVSE LGPEDTSKNI VEIIFQSSWL KKQTPICKID  180
RILKVHNTQK TISKFEEYRE SIKAKATKLP KKHPRCIADG NELLRFHSTT FVCSLGLNCS  240
SNLCNSIPHC NICSIIKNGF DKFSGDLIED GILTTATSGR AHDKAVVAAE DSGKRAMLVC  300
RVIAGRVKKN MEDSIGIGPI GMEEYDSVAG AVGVYSNLDE LYVFNPKAIL PCFVVIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein