PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1036800.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 470aa MW: 51725.8 Da PI: 8.7948

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1036800.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g1036800.m01 89 FVCEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	11.7	0.00083	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g1036800.m01 166 WKCDKCSKIYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD TNISPHQSDH QHPHPTNKIK 60 KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 NNKDQIKKRA YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKIYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SAKLSASQLT ATNTTTNPNI 240 MTPQISLFPF QNPPPPFTTI SLTPWDPPHH QNPNPNLNHH LIKTESHHHN HFPTTQSHKG 300 LLTSPFQNLH LSTHPSSKPS TSSAHLSATA LLQKAATVGS ASSAAASAGQ QAQSAGLTVG 360 EFGTASHMNM ISTDYLGEFT SGDLATWQKT DRLTRDFLGL TGDGTGNHNV GAVNVVKDML 420 TYAGSVEFHQ QQQQPYDQPL RGHNNSLLLK PQGFGFAETT AAASETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD TNISPHQSDH QHPHPTNKIK  60
KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
NNKDQIKKRA YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKIYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SAKLSASQLT ATNTTTNPNI  240
MTPQISLFPF QNPPPPFTTI SLTPWDPPHH QNPNPNLNHH LIKTESHHHN HFPTTQSHKG  300
LLTSPFQNLH LSTHPSSKPS TSSAHLSATA LLQKAATVGS ASSAAASAGQ QAQSAGLTVG  360
EFGTASHMNM ISTDYLGEFT SGDLATWQKT DRLTRDFLGL TGDGTGNHNV GAVNVVKDML  420
TYAGSVEFHQ QQQQPYDQPL RGHNNSLLLK PQGFGFAETT AAASETWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-107	C2H2 family protein