PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1036140.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 211aa    MW: 23369.2 Da    PI: 5.2055
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1036140.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-3871071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+
  Pd.00g1036140.m01   7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLPVSDRCRAALTISYEAQARVQDPIYGCVSHIFALQQQVISLQ 98 
                        7*************************89**************************************************************** PP

             DUF260  92 aelallkee 100
                        a+la++ke+
  Pd.00g1036140.m01  99 AQLASVKEQ 107
                        *****9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAQLPVSD  60
RCRAALTISY EAQARVQDPI YGCVSHIFAL QQQVISLQAQ LASVKEQAAK GFSNANPIEK  120
YDTNVQSWPQ SESSNILMPQ SMNLNNINDS MLPFYSENKN SNSFEGDRNF MIPEVLNDMY  180
GSYGDGEASN SMSSLDMQMS NMQWGFDQDQ D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.17e-65LBD family protein