PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g103360.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 43554.6 Da PI: 7.0684 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++k++G g+W++ ++ g++R++k+c++rw +yl Pd.00g103360.m01 21 KGPWTPEEDEKLVEYIKRYGHGSWRALPKLAGLNRCGKSCRLRWTNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 74 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++++ G++ W++Ia+ ++ gRt++++k++w+++l Pd.00g103360.m01 74 RGNFSQEEEQTIINLHALVGNK-WSAIANNLP-GRTDNEIKNFWNTHL 119 89********************.*********.************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence |
MMGRSASASG WCDEKSSLVK KGPWTPEEDE KLVEYIKRYG HGSWRALPKL AGLNRCGKSC 60 RLRWTNYLRP NIKRGNFSQE EEQTIINLHA LVGNKWSAIA NNLPGRTDNE IKNFWNTHLK 120 KKLLQMGIDP VTHRPITANN SDNIHHLYYL MINHILSSLA PQLLASSSFS GTCGSLANNN 180 LMMNMNPWGI NNNADLMRLH YSDAKIQVLR NILVQQFLSS TSTPNVEAAF NYLLPSAQPS 240 NLISNISGLL KALHDLDHSQ PPRSPPVLVP SSGSGKSDKL LGYDDHAPFF SSTTGSNKIC 300 TNNNNNSRDH SQQLNLGGSS SSYATPTDDH DQLPLLVSSA APSPESSAAN PTVDNSISNT 360 TYSTTFEAWG NPPDPMDHDD EATNHSYWKD IIME |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-74 | MYB family protein |