PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1030130.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 487aa MW: 54881.7 Da PI: 8.4601

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1030130.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.5e-07	368	415	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E lvd++ ++G g+W+ I r + Rt+ +++++w+++l Pd.00g1030130.m01 368 WTLSEVTTLVDGISEYGVGRWTDIKRVLFsssAYRTPIDLRDKWRNLL 415 **************************999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MKSQRVKVEG SFAPALEDET ETIEHLLAEP KSEYVTVDGV LCCGKENAGK CVDIEDFSSG 60 YDFGLNTYSG LHSAHPRGRY DELEFGVLDG LLDEVDEVED IHAINGLASP CDDYLLDIGF 120 TGKASELGFG PCEKSHLGNS SSESQSPRLS GSSNGAVGIS ESSTVTIQEF ECKNNSIEKA 180 VTHEFHGGFR RKKRRRTPVE GNVYPASINL QNLELDNDEK TLVKEIVSGE NEKLSVEATK 240 LGAFRKEKRL RKPTLRYIEE FSGKKSKDSN ERENCSALTA TQDRSKVRCQ NEHHQMSPGI 300 LSSVPEEDSI SENQTLAEFR TQRKLAKKHA SILALESDEQ PITSESEDDH VPKKRSRKHD 360 RRKHQRMWTL SEVTTLVDGI SEYGVGRWTD IKRVLFSSSA YRTPIDLRDK WRNLLRASCG 420 KKMKKEVEQK EMRALPKSLV RRVRELATVH PYPRQRGKKF APPILPTPSK SASSDLIRKY 480 VRRKNRS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MKSQRVKVEG SFAPALEDET ETIEHLLAEP KSEYVTVDGV LCCGKENAGK CVDIEDFSSG  60
YDFGLNTYSG LHSAHPRGRY DELEFGVLDG LLDEVDEVED IHAINGLASP CDDYLLDIGF  120
TGKASELGFG PCEKSHLGNS SSESQSPRLS GSSNGAVGIS ESSTVTIQEF ECKNNSIEKA  180
VTHEFHGGFR RKKRRRTPVE GNVYPASINL QNLELDNDEK TLVKEIVSGE NEKLSVEATK  240
LGAFRKEKRL RKPTLRYIEE FSGKKSKDSN ERENCSALTA TQDRSKVRCQ NEHHQMSPGI  300
LSSVPEEDSI SENQTLAEFR TQRKLAKKHA SILALESDEQ PITSESEDDH VPKKRSRKHD  360
RRKHQRMWTL SEVTTLVDGI SEYGVGRWTD IKRVLFSSSA YRTPIDLRDK WRNLLRASCG  420
KKMKKEVEQK EMRALPKSLV RRVRELATVH PYPRQRGKKF APPILPTPSK SASSDLIRKY  480
VRRKNRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	RRKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-19	MYB_related family protein